New Publications for May 2013

Wine Y, Boutz DR, Lavinder JJ, Miklos AE, Hughes RA, Hoi KH, Jung ST, Horton AP, Murrin EM, Ellington AD, Marcotte EM, Georgiou G (2013).  Molecular deconvolution of the monoclonal antibodies that comprise the polyclonal serum response.  Proc Natl Acad Sci U S A.  110(8):2993-8  |  Pubmed

Papageorgiou SG, Diamantopoulos P, Levidou G, Angelopoulou MK, Economopoulou P, Efthimiou A, Constantinou N, Katsigiannis A, Korkolopoulou P, Pappa V, Economopoulou C, Georgiou G, Dimou M, Tsirigotis P, Kyrtsonis MC, Kotsianidis I, Kalpadakis C, Dimopoulos MA, Beris P, Meletis J, Pangalis GA, Dervenoulas J, Panayiotidis P, Vassilakopoulos TP (2013).  Isolated central nervous system relapses in primary mediastinal large B-cell lymphoma after CHOP-like chemotherapy with or without Rituximab.  Hematol Oncol.  31(1):10-7  |  Pubmed

Schertzer JW, Whiteley M (2013).  Bacterial outer membrane vesicles in trafficking, communication and the host-pathogen interaction.  J Mol Microbiol Biotechnol.  23(1-2):118-30  |  Pubmed

Davidson EA, Meyer AJ, Ellefson JW, Levy M, Ellington AD (2013).  An in vitro autogene.  ACS Synth Biol.  1(5):190-6  |  Pubmed

Jiang YS, Li B, Milligan J, Bhadra S, Ellington AD (2013).  Real-time detection of isothermal amplification reactions with thermostable catalytic hairpin assembly.  J Am Chem Soc.  |  Epub ahead of print

Singh-Blom UM, Natarajan N, Tewari A, Woods JO, Dhillon IS, Marcotte EM (2013).  Prediction and validation of gene-disease associations using methods inspired by social network analyses.  PLoS One.  1;8(5):e58977  |  Pubmed

Polioudakis D, Bhinge AA, Killion PJ, Lee BK, Abell NS, Iyer VR (2013).  A Myc-microRNA network promotes exit from quiescence by suppressing the interferon response and cell-cycle arrest genes.  Nucleic Acids Res.  41(4):2239-54  |  Pubmed

Marshall WF, Young KD, Swaffer M, Wood E, Nurse P, Kimura A, Frankel J, Wallingford J, Walbot V, Qu X, Roeder AH (2013).  What determines cell size?  BMC Biol.  10:101  |  Pubmed

Smith-Tsurkan SD, Herr RA, Khuder S, Wilke CO, Novella IS (2013).  The role of environmental factors on the evolution of phenotypic diversity in vesicular stomatitis virus populations.  J Gen Virol.  94(Pt 4):860-8  |  Pubmed

Maranhao A, Ellington AD (2013).  Endowing cells with logic and memory.  Nat Biotechnol.  31:413–415  |  Nature

Quandt EM, Hammerling MJ, Summers RM, Otoupal PB, Slater B, Alnahhas RN, Dasgupta A, Bachman JL, Subramanian MV, Barrick JE (2013).  Decaffeination and Measurement of Caffeine Content by Addicted Escherichia coli with a Refactored N-Demethylation Operon from Pseudomonas putida CBB5.  ACS Synth Biol.  |  Epub ahead of print

Pride AC, Herrera CM, Guan Z, Giles DK, Trent MS (2013).  The outer surface lipoprotein VolA mediates utilization of exogenous lipids by Vibrio cholerae.  MBio.  4(3)  |  Pubmed

Xu J, Tack D, Hughes RA, Ellington AD, Gray JJ (2013).  Structure-based non-canonical amino acid design to covalently crosslink an antibody-antigen complex.  J Struct Biol.  |  Epub ahead of print

Madsen JA, Xu H, Robinson MR, Horton AP, Shaw JB, Giles DK, Kaoud TS, Dalby KN, Trent MS, Brodbelt JS (2013).  High-Throughput Database Search and Large-Scale Negative Polarity LC-MS/MSwith Ultraviolet Photodissociation for Complex Proteomic Samples.  Mol Cell Proteomics  |  Epub ahead of print

Marcotte E, Boone C, Babu MM, Gavin AC (2013).  Network Biology editorial 2013.  Mol Biosyst.  |  Epub ahead of print

Mohr S, Ghanem E, Smith W, Sheeter D, Qin Y, King O, Polioudakis D, Iyer VR, Hunicke-Smith S, Swamy S, Kuersten S, Lambowitz AM (2013).  Thermostable group II intron reverse transcriptase fusion proteins and their use in cDNA synthesis and next-generation RNA sequencing.  RNA  |  Epub ahead of print

Meyer AG, Wilke CO (2013).  Integrating sequence variation and protein structure to identify sites under selection.  Mol Biol Evol.  30(1):36-44  |  Pubmed

Lee BS, Dekker JD, Lee BK, Iyer VR, Sleckman BP, Shaffer AL 3rd, Ippolito GC, Tucker PW (2013).  The BCL11A transcription factor directly activates RAG gene expression and V(D)J recombination.  Mol Cell Biol.  33(9):1768-81  |  Pubmed

Beris P, Georgiou G (2013).  Overview of myelodysplastic syndromes.  Semin Hematol.  49(4):287-94  |  Pubmed

Demogines A, Abraham J, Choe H, Farzan M, Sawyer SL (2013).  Dual host-virus arms races shape an essential housekeeping protein.  PLoS Biol.  11(5):e1001571  |  Pubmed